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Advance Payments, Partial Invoices & Final Invoices: How to Book Them Correctly

How to correctly book advance payments, partial invoices and final invoices in simple bookkeeping. With practical example, VAT tips and FAQ.

e
einzly Redaktion
Tax & Finance Editorial
7 min read
1 Mar 2026

For larger projects, it is common not to invoice everything at once. Advance payments, partial invoices and final invoices are part of daily business for many self-employed professionals. But how do you book them correctly?


01Clarifying the Terms

TermDefinitionTypical Use
Advance payment (deposit)Payment before the service beginsPre-financing materials, securing the contract
Progress paymentPayment during an ongoing projectLarge projects, construction, IT projects
Partial invoiceInvoice for services already renderedCompleted project phases
Final invoiceClosing invoice for the entire contractProject completion, remaining balance


02How to Book in Simple Bookkeeping

In cash-basis accounting, the cash flow principle applies: you book each payment when the money actually flows. How to create partial invoices and deposits in practice is covered in a separate article. The basic principle is simple:

  • Advance payment: Book as income as soon as the money arrives in your account
  • Partial invoice: Book as income as soon as it is paid
  • Final invoice: Book the remaining amount as income as soon as it is paid
Simple = simpleIn simple bookkeeping, you do not need accruals or advance payment accounts. Each payment is recorded as income upon receipt -- that's it.


03Practical Example: Web Design Project

You are building a website for CHF 10,000 (excl. VAT). Three payments are agreed: 30% advance payment, 40% after design approval, 30% upon project completion.

PhaseAmountBooked as Income
Advance payment (contract awarded)CHF 3,000Upon receipt in January
Partial invoice (design approval)CHF 4,000Upon receipt in March
Final invoice (go-live)CHF 3,000Upon receipt in May
TotalCHF 10,000


04VAT on Partial Invoices

If you are subject to VAT, you must show VAT separately on each partial invoice. Also make sure to include all mandatory invoice details. VAT is calculated on the partial amount -- not on the total contract value.

On the final invoice, only the VAT on the remaining amount is shown. Important: The sum of all partial VAT amounts must equal the VAT on the total amount.

InvoiceNetVAT 8.1%Gross
Advance paymentCHF 3,000.00CHF 243.00CHF 3,243.00
Partial invoiceCHF 4,000.00CHF 324.00CHF 4,324.00
Final invoiceCHF 3,000.00CHF 243.00CHF 3,243.00
TotalCHF 10,000.00CHF 810.00CHF 10,810.00


05Practical Tips

  • Define the payment schedule in the contract -- this avoids disputes
  • Number each partial invoice separately (e.g. INV-2026-042a, INV-2026-042b)
  • List all previous payments on the final invoice and deduct them
  • Don't wait too long -- issue the final invoice immediately after project completion
Partial and final invoices with einzlyWith einzly, you can create partial and final invoices in seconds -- including QR code and automatic VAT calculation.


06Frequently Asked Questions About Partial Invoices and Advance Payments

Yes, as income upon receipt. In simple bookkeeping, you book every payment when it arrives in your account -- regardless of whether the service has already been provided.
Total amount minus all previous partial payments = remaining balance. VAT is only calculated on the remaining amount. On the final invoice, you list all previous payments and deduct them from the total.
A progress payment is a lump-sum advance -- often a percentage of the total. A partial invoice, on the other hand, bills for specific services rendered, e.g. a completed project phase.
Yes, if you are subject to VAT. VAT is calculated and shown separately on each payment -- including advance payments and progress payments.
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