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Partial Invoices & Deposits — How It Works with einzly

Larger projects are rarely paid in one go. Whether it's web design, a consulting mandate, or a trade job — deposits and partial invoices are part of everyday life for the self-employed. Yet many tools only support a 1:1 flow: one quote, one invoice. einzly goes further: define a deposit directly on the quote, send multiple partial invoices per order, and create a clean final invoice with automatic deductions at the end.

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einzly Redaktion
Tax & Finance Editorial · einzly
7 min read
4 Mar 2026
Related topics
Partial InvoicesDepositsFeatures

01Why Partial Invoices Matter for the Self-Employed

Imagine this: you've won a contract worth CHF 15,000. Invoice the entire amount at the end? Risky. Your client could raise objections months later, and in the meantime you've been fronting material costs and time. Partial invoices solve this problem — they secure your cash flow and reduce risk for both sides.

In Switzerland, partial invoices and deposits are standard practice — especially in construction, the creative industry, IT projects, and consulting. Legally, each partial invoice is a standalone invoice with its own VAT calculation. Learn more in our article on advance payments, partial invoices and final invoices. The final invoice shows the grand total and deducts all amounts already paid.

VAT on Partial InvoicesEach partial invoice includes VAT calculated individually. This ensures the tax is correctly stated on every invoice — no double-charging, no corrections needed on the final invoice.


02The Complete Workflow in einzly

einzly covers the entire process — from the quote with deposit to the final invoice. Here's an overview:

1
Create a Quote with Deposit

You create a quote as usual and enable the deposit option. Choose between a fixed amount (e.g. CHF 3,000) or a percentage (e.g. 30%). The deposit is displayed on the quote and in the PDF — the client knows from the start what's expected.

2
Client Accepts Online

Your client receives the quote via link or email. They see the line items, the total, and the agreed deposit. With one click they accept — you're notified immediately.

3
Order Is Created Automatically

Once the quote is accepted, einzly automatically creates an order. All data (client, line items, deposit) is carried over. The order appears in your order overview.

4
Send Partial Invoices

In the order you'll see the buttons 'Create Partial Invoice' and 'Create Final Invoice'. Create as many partial invoices as needed — each with its own amount, VAT, and QR payment slip.

5
Final Invoice with Deductions

At the end, you create the final invoice. einzly automatically lists all previously invoiced partial invoices as deductions — the remaining balance is calculated and shown on the QR payment slip.



03Defining a Deposit on the Quote

When creating a quote, you'll find the option 'Deposit required?' below the line items. Click 'Yes' and choose:

  • Percentage — e.g. 30% of the grand total. The amount is calculated and displayed in real time.
  • Fixed Amount — e.g. CHF 5,000. The percentage is calculated automatically.

The deposit is not added to the total — it's an indication to the client of the amount due upon order confirmation. On the PDF and in the online view, the information appears below the total: 'Agreed deposit: CHF 4,500.00 (30.0%)'.

Tip: Deposits as a Trust SignalA clearly communicated deposit looks professional. It protects you against payment defaults and shows the client that you work in a structured way. 20–50% is common depending on the industry.


04Creating and Sending Partial Invoices

Once your order is active, you can create partial invoices. In the order overview, click 'Create Partial Invoice'. You'll immediately see:

  • The grand total of the order
  • How much has already been invoiced
  • How much is still outstanding

Enter the partial amount — as a percentage or a fixed amount. einzly automatically calculates net, VAT, and gross. The partial invoice receives a regular invoice number and the title 'Partial Invoice' instead of 'Invoice'. You can then send it directly. The QR payment slip contains the partial amount.

Each partial invoice references the order and the original quote — so your client can clearly match the payment.



05Keeping Track: Paid, Outstanding, Remaining Balance

In the order overview you can see the progress per order: how much has been invoiced, how much of that has been paid, and how much is still outstanding. You always have a clear picture — no spreadsheet on the side.

You can also mark partial invoices as 'paid' directly in the order overview — no need to switch to the invoices page. The remaining balance updates automatically.

Example: Web Project CHF 10,000• Deposit (30%): CHF 3,000 → Partial Invoice 1 sent and paid • After Milestone 2: CHF 3,000 → Partial Invoice 2 sent and paid • Final Invoice: Total CHF 10,000 minus CHF 6,000 already paid = CHF 4,000 remaining balance Everything calculated automatically and documented cleanly.


06The Final Invoice — Everything Tallied Up

At the end of the project, you create the final invoice. einzly automatically carries over all line items from the original quote. You can adjust them if needed — for example if additional work was required.

The special part: the final invoice contains a deductions block. All previously invoiced partial invoices are listed here — with invoice number, date, and amount. The remaining balance is calculated automatically.

Here's what the deductions block looks like on the final invoice:

ItemAmount
Total Project AmountCHF 10,000.00
Less Partial Invoice R-2026-003 (15.01.2026)– CHF 3,000.00
Less Partial Invoice R-2026-007 (15.03.2026)– CHF 3,000.00
Amount DueCHF 4,000.00

The QR payment slip on the final invoice contains only the remaining balance — not the grand total. This avoids any confusion for the client.



07Backwards Compatible: Works Without Deposits Too

Not every project needs partial invoices. If you don't define a deposit on a quote, einzly works as usual: create a quote, accept the order, create one invoice. The entire partial invoicing flow is optional and only appears when you activate it.



08Frequently Asked Questions

As many as you need. There's no limit. Each partial invoice gets its own invoice number and can be sent and marked as paid individually.
Yes. Each partial invoice includes VAT calculated individually. The final invoice shows the full project total with VAT and deducts the gross amounts already invoiced. This ensures VAT is never charged twice.
Yes. The final invoice is pre-filled with the line items from the quote. You can add, modify, or remove items — for example if additional work was required.
The order is automatically marked as 'completed' once the final invoice is created. You can still find it in the order overview under 'Completed'.
No. Your client views the quote with deposit information via a secure link in the browser — on any device, without login or app.
Yes, as long as the quote hasn't been accepted yet. You can adjust the amount or percentage at any time by editing the quote.
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