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Swiss Accounting Software 2026: The Complete Comparison

Which accounting software truly fits your sole proprietorship? We compare bexio, Banana, Magic Heidi, Milkee and einzly — honestly, transparently and with a clear recommendation.

eR
einzly Redaktion
Editorial
12 min read
9 Mar 2026
Related topics
ComparisonAccountingSwitzerlandSole Proprietorship2026

01Why this comparison?

As a sole proprietor or freelancer, your needs are different from those of an SME with 20 employees. Yet many comparison sites recommend the same tools — regardless of whether you are a freelancer or leading a team of 50. This means you end up paying for features you never use.

In this comparison, we focus exclusively on the needs of sole proprietors and freelancers in Switzerland. We compare five providers: bexio, Banana, Magic Heidi, Milkee and einzly.

Transparency noteThis comparison is published by einzly. Nevertheless, we try to be as objective as possible and honestly mention where other providers are stronger.


02What does a sole proprietorship really need?

Before you decide on a tool, ask yourself: What do you really need? Most sole proprietors do not need inventory management, payroll or project management. What they do need:

  • Create Swiss QR invoices — legally compliant, with correct payment slip
  • Quotes and orders — professional, with your own letterhead
  • Record expenses — simple and clear
  • VAT statement — automatically calculated if VAT-registered
  • Annual closing — for the tax return
  • Dunning — automatic payment reminders
  • Multilingual — invoices in DE, FR, IT or EN
The rule of thumbIf you work alone and have revenue under CHF 500,000, you do not need double-entry bookkeeping. A simple income-expense statement is sufficient — and your tool should do exactly that without overwhelming you with complexity.


03The 5 providers at a glance

bexio — The market leader for SMEs

bexio is the best-known accounting software in Switzerland — and positioned accordingly. The tool is primarily aimed at SMEs with teams and offers everything from payroll to inventory management and project management.

  • Prices: From CHF 35/month (Basic) to CHF 65/month (Pro)
  • Strengths: Huge feature set, many integrations, bank connection
  • Weaknesses for sole proprietors: Too complex, too expensive, many unused modules
  • Verdict: Great for SMEs with employees. Overkill for sole proprietors.

Banana — The desktop classic

Banana has been around for over 20 years. The software runs locally on your computer and is particularly popular with fiduciaries. Those with accounting knowledge will find their way around easily.

  • Prices: Free (limited) to CHF 149 one-time purchase
  • Strengths: One-time purchase, powerful booking functions, works offline
  • Weaknesses for sole proprietors: Steep learning curve, no Swiss QR invoices out of the box, no cloud access, no email sending
  • Verdict: For accounting professionals and fiduciaries. Difficult for freelancers without prior knowledge.

Magic Heidi — The freelancer focus

Magic Heidi was built specifically for Swiss freelancers and offers native apps for iOS, Android, Mac and Windows. The tool scores with AI receipt scanning and beautiful design.

  • Prices: CHF 30/month or CHF 299/year
  • Strengths: Native apps on all platforms, AI receipt scanning, modern design
  • Weaknesses: No automatic annual closing, no automatic reminders, no link tracking, no letterhead customisation
  • Verdict: Solid tool for freelancers who mainly want to work on their phone.

Milkee — The Swiss all-rounder

Milkee positions itself as simple accounting software for Swiss freelancers and offers time tracking, client management and AI receipt scanning.

  • Prices: From CHF 24.90/month (Basic) to CHF 49.90/month (Scale). Bank connection CHF 15/month extra.
  • Strengths: Time tracking, double-entry bookkeeping possible, AI scans
  • Weaknesses: Basic without quotes and VAT, revenue limit CHF 500k, only 14-day trial, no automatic reminders
  • Verdict: Good all-rounder, but the important features quickly cost CHF 35+/month.

einzly — Built for sole proprietors

einzly was built from the ground up for Swiss sole proprietors and freelancers. The focus is on simplicity: invoices, quotes, expenses, VAT and annual closing — everything you need, without what you don't.

  • Prices: CHF 9/month (Basic) or CHF 15/month (Pro). Annually from CHF 6.67/month.
  • Strengths: Lowest price, all features included, automatic reminders, link tracking, custom letterhead, automatic annual closing, 30-day free trial
  • Weaknesses: No native app (web app with home screen integration), no AI receipt scanning, no bank connection
  • Verdict: The cheapest and simplest solution for sole proprietors who have no accounting knowledge.


04The big feature comparison

The following table shows the most important features for sole proprietors in a direct comparison. We focus on what really matters for solo freelancers.

FeaturebexioBananaMagic HeidiMilkeeeinzly
Price/monthFrom CHF 35One-time purchaseCHF 30From CHF 24.90From CHF 9
Price/yearFrom CHF 420CHF 69–149CHF 299From CHF 299From CHF 80
Swiss QR invoicesLimited
QuotesBusiness+ only
VAT statementBusiness+ only✓ Automatic
Annual closing✓ Automatic
Automatic reminders
Link tracking
Partial invoices
Custom letterheadLimitedBusiness+ only
Email sending
Mobile useApp✗ Desktop✓ Native apps✓ AppHome screen app
AI receipt scanning
Bank connection✓ (Advanced+)+CHF 15/mo.
Time tracking
MultilingualDE/FR/ENYesDE/FR/IT/ENDE/FRDE/FR/IT/EN
Free trial30 daysFree version3 invoices14 days30 days
Accounting knowledgeRecommendedRequiredNot neededNot neededNot needed


05What does it really cost? The price comparison

The price on the website is not always the price you end up paying. With some providers, important features are missing from the basic package — you need to upgrade or book add-ons.

ProviderBase price/mo.For all features/mo.Annually (all features)
bexioCHF 35 (Basic)CHF 52+ (Advanced)CHF 624+
BananaOne-time CHF 69–149One-time purchaseOne-time purchase
Magic HeidiCHF 30CHF 30CHF 299
MilkeeCHF 24.90 (no VAT/quotes)CHF 34.90+ (Business)CHF 419+
einzlyCHF 9 (Basic)CHF 15 (Pro)CHF 80 (Basic) / CHF 144 (Pro)
Calculate annuallyAnnual costs are the fairest comparison. einzly Basic costs CHF 80/year — that is CHF 6.67/month. Even the more expensive einzly Pro (CHF 144/year) is cheaper than the cheapest plan of any other provider.


06Which tool suits whom?

1
You have employees and need payroll?

bexio is the right choice. No other tool in this comparison offers payroll.

2
You are a fiduciary or accounting professional?

Banana gives you full control over every journal entry. If you know what you are doing, it is a powerful tool.

3
You work a lot on the go and want native apps?

Magic Heidi has the best native apps (iOS, Android, Mac, Windows) and AI receipt scanning.

4
You need time tracking and project management?

Milkee offers time tracking and project management in one tool.

5
You want it simple, affordable and with everything you need?

einzly gives you invoices, quotes, VAT, annual closing, automatic reminders and link tracking — from CHF 6.67/month.



07Missing a feature? Tell us!

No tool is perfect — and we are no exception. That is why we built the feature request function into einzly: directly in the dashboard you can tell us which function you are missing. Every request is read, prioritised and — if it fits our vision — built just for you.

Yes, you read that right: we build your feature request — exclusively for you, for a small monthly surcharge. And the best part: einzly will never cost more than CHF 25/month. No matter how many features you add. That is our promise.

Many features in einzly were born directly from user feedback. Partial invoices, foreign currency invoices and the terms and conditions upload — all feature requests that went live within weeks.

Your personal featureNeed a special adaptation for your business? At einzly we build individual feature requests — just for you, with a small surcharge, but never more than CHF 25/month total. From adapted letterhead layouts to special invoice templates. Just write to us.


08Switch from any provider — in 3 steps

Switching to einzly is deliberately simple. You do not need to retype everything — you can import your client data via CSV upload.

1
Export client data

Export your clients from your current tool as a CSV file. This takes just a few clicks in bexio, Milkee, Magic Heidi and Banana.

2
Register with einzly

Create your account in 30 seconds. No credit card required — you have 30 days to test everything for free.

3
Upload CSV and get started

Import your client data via CSV upload directly into einzly. Your first Swiss QR invoice is created in seconds.

Tip: Test in parallelYou do not need to cancel your current tool immediately. Test einzly for 30 days in parallel and only switch when you are convinced.


09Conclusion: The best tool for your sole proprietorship

There is no single best accounting software — there is the best one for you. If you run an SME with employees, bexio is the right choice. If you are an accounting professional, Banana provides the depth you need.

But if you are a sole proprietor or freelancer looking for a tool that simply works, covers all the essentials and remains affordable — then einzly is the strongest option on the market. From CHF 6.67/month you get Swiss QR invoices, quotes, automatic reminders, link tracking, VAT statements and annual closing. No prior knowledge, no bloat.

Try einzly free for 30 days — no credit card required. And if something is missing: submit a feature request and we will take care of it.



10Frequently asked questions

einzly is the cheapest complete solution at CHF 9/month (or CHF 6.67/month with annual billing). Banana offers a one-time purchase but has no cloud features and requires accounting knowledge.
No. Below CHF 500,000 annual revenue, a simple income-expense statement is sufficient (CO Art. 957). Double-entry bookkeeping is only mandatory for LLCs or corporations.
Yes. Export your client data as CSV and import it into einzly. Registration takes 30 seconds, the import just a few minutes.
bexio, Magic Heidi, Milkee and einzly all create correct Swiss QR invoices. Banana's QR invoice support is limited. einzly additionally offers custom letterhead, link tracking and automatic reminders.
You are required to keep books from the first franc of revenue (CO Art. 957). A tool is not mandatory but makes the work significantly easier — especially for the tax return.
Basic (CHF 9/mo.) includes everything you need: invoices, quotes, expenses, VAT, annual closing, reminders. Pro (CHF 15/mo.) adds foreign currencies, partial invoices, advanced statistics and priority support.
Not yet. AI receipt scanning is on our roadmap. If you need this feature, Magic Heidi or Milkee are a good choice.
Yes. At einzly we build individual feature requests — exclusively for you, with a small monthly surcharge. And einzly will never cost more than CHF 25/month, no matter how many features you add. From special letterhead layouts to invoice templates — just submit your request in the dashboard.
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